ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-130
source: miRBase, original name: ptr-mir-301a (MI0008597)
SEQUENCE & STRUCTURE| miRNA CAGTGCAATAGTATTGTCAAAGC miRNA* TCTGACTTTATTGCACTACT mismatches: 3 bulges: 3 |
pre-miRNA
ACTGCTAACGAATGCTCTGACTTTATTGCACTACTGTACTTTACAGCTAGCAGTGCAATAGTATTGTCAAAGCATCTGAAAGCAG
dot-bracket secondary structure
.(((((..((.(((((.((((.((((((((((.(((((...))))).....))))))))))....)))).))))).))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ACTGCTAACGAATGCTCTGACTTTATTGCACTACTGTACTTTACAGCTAGCAGTGCAATAGTATTGTCAAAGCATCTGAAAGCAG
dot-bracket secondary structure
.(((((..((.(((((.((((.((((((((((.(((((...))))).....))))))))))....)))).))))).))..)))))
SIMILARITIES| miRBase eca-mir-301a: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: mml-mir-301a from miRBase (MNEST027829) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
