ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-154
source: miRBase, original name: ptr-mir-323 (MI0008615)
SEQUENCE & STRUCTURE| miRNA CACATTACACGGTCGACCTCT miRNA* AGGTGGTCCGTGGCGCGTTCG mismatches: 7 bulges: 0 |
pre-miRNA
TGGTACTTGGAGAGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCTTTGCAGTATCTAATC
dot-bracket secondary structure
.((((((.(.((((((((.(.(((((....((.((((........)))).))....))))).).)))))))).))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGGTACTTGGAGAGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCTTTGCAGTATCTAATC
dot-bracket secondary structure
.((((((.(.((((((((.(.(((((....((.((((........)))).))....))))).).)))))))).))))))).....
SIMILARITIES| miRBase eca-mir-323: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-33 |
Identical with: hsa-mir-323 from miRBase (MNEST028569) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
