ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-330
source: miRBase, original name: ptr-mir-330 (MI0008621)
SEQUENCE & STRUCTURE| miRNA GCAAAGCACACGGCCTGCAGAGA miRNA* TCTGGGCCTGTGTCTTAGGCTC mismatches: 1 bulges: 5 |
pre-miRNA
CTTTGGCGATCACTGCCTCTCTGGGCCTGTGTCTTAGGCTCTGCAAGATCAACCGAGCAAAGCACACGGCCTGCAGAGAGGCAGCGCTCTGCC
dot-bracket secondary structure
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CTTTGGCGATCACTGCCTCTCTGGGCCTGTGTCTTAGGCTCTGCAAGATCAACCGAGCAAAGCACACGGCCTGCAGAGAGGCAGCGCTCTGCC
dot-bracket secondary structure
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).)))
SIMILARITIES| miRBase mml-mir-330: 7e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-330: 1e-34 |
Identical with: cfa-mir-330 from miRBase (MNEST026802) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
