ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-335
source: miRBase, original name: ptr-mir-335 (MI0008623)
SEQUENCE & STRUCTURE| miRNA TCAAGAGCAATAACGAAAAATGT miRNA* GTTTTTCATTATTGCTCCTGACC mismatches: 3 bulges: 0 |
pre-miRNA
GTTTTGAGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTCATAAACCGTTTTTCATTATTGCTCCTGACCTCCTCTCATTTGCTATATTCA
dot-bracket secondary structure
((..((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))...))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GTTTTGAGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTCATAAACCGTTTTTCATTATTGCTCCTGACCTCCTCTCATTTGCTATATTCA
dot-bracket secondary structure
((..((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))...))........
SIMILARITIES| miRBase hsa-mir-335: 7e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-335: 1e-34 |
Identical with: cfa-mir-335 from miRBase (MNEST026804) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
