ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-154
source: miRBase, original name: ptr-mir-381 (MI0008654)
SEQUENCE & STRUCTURE| miRNA TATACAAGGGCAAGCTCTCTGT miRNA* AGCGAGGTTGCCCTTTGTATATT mismatches: 3 bulges: 1 |
pre-miRNA
ACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTA
dot-bracket secondary structure
(((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTA
dot-bracket secondary structure
(((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))).
SIMILARITIES| miRBase mml-mir-381: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 8e-26 |
Identical with: mmu-mir-381 from miRBase (MNEST032054) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
