ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-154
source: miRBase, original name: ptr-mir-539 (MI0008742)
SEQUENCE & STRUCTURE| miRNA GGAGAAATTATCCTTGGTGTGT miRNA* CATACAAGGACAATTTCTTTTT mismatches: 1 bulges: 2 |
pre-miRNA
TACTTGAGGAGAAATTATCCTTGGTGTGTTCGCTTTATTTATGATGAATCATACAAGGACAATTTCTTTTTGAGTAT
dot-bracket secondary structure
((((..((((((((((.((((((.(((((((((.........).)))).)))))))))).))))))))))..)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TACTTGAGGAGAAATTATCCTTGGTGTGTTCGCTTTATTTATGATGAATCATACAAGGACAATTTCTTTTTGAGTAT
dot-bracket secondary structure
((((..((((((((((.((((((.(((((((((.........).)))).)))))))))).))))))))))..)))).
SIMILARITIES| miRBase mml-mir-539: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-32 |
Identical with: ppy-mir-539 from miRBase (MNEST031126) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
