ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-548i-1 (MI0008753)
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGCGGATTTTGCC miRNA* CAAAAATAGCAATTATTTTTGT mismatches: 3 bulges: 0 |
pre-miRNA
CAGATGGCTCCGAAGTTTGCACCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAACGTAATGGCAAAAATAGCAATTATTTTTGTACCA
GCCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGCCATCTC
dot-bracket secondary structure
.((((((((((((((((((.....((((((((((((((((((((((((((...(((((((((((....)))))))))))...))))))))))))))))))
))))))))................))))))))).....))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAGATGGCTCCGAAGTTTGCACCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAACGTAATGGCAAAAATAGCAATTATTTTTGTACCA
GCCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGCCATCTC
dot-bracket secondary structure
.((((((((((((((((((.....((((((((((((((((((((((((((...(((((((((((....)))))))))))...))))))))))))))))))
))))))))................))))))))).....))))))))).
SIMILARITIES| miRBase hsa-mir-548i-1: 1e-75 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 3e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
