ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-548i-3 (MI0008755)
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGCGGATTTTGCC miRNA* CAAAAACAGCAATTATTTTTGT mismatches: 2 bulges: 0 |
pre-miRNA
AGATGGCTCCGAAGTTTGCATCCTCTTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAACAGCAATTATTTTTGTACTAG
CCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGACATCTCA
dot-bracket secondary structure
(((((.((((((((((((.......((((((((((((((((((((((((.(.(((((((((((....))))))))))).).)))))))))))))))))))
)))))..................))))))))).....))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGATGGCTCCGAAGTTTGCATCCTCTTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAACAGCAATTATTTTTGTACTAG
CCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGACATCTCA
dot-bracket secondary structure
(((((.((((((((((((.......((((((((((((((((((((((((.(.(((((((((((....))))))))))).).)))))))))))))))))))
)))))..................))))))))).....))).)))))..
SIMILARITIES| miRBase ptr-mir-548i-5: 7e-71 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 2e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
