ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-548i-4 (MI0008756)
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGCGGATTTTGCC miRNA* CAAAAATAACAATTATTTTTTT mismatches: 3 bulges: 0 |
pre-miRNA
CAGATGGCTCCGAAGTTTGCATCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAATAACAATTATTTTTTTTACC
AGCCTAGTATCTTTTCTCCTTTACCAAACTTTGTCCCTGAATCATCTC
dot-bracket secondary structure
.(((((..(((((((((((.....(((((((((((((.(((((((((((..(.(((((((((((....))))))))))).)..)))))))))))..))))
)))))))))...............))))))))).....))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAGATGGCTCCGAAGTTTGCATCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAATAACAATTATTTTTTTTACC
AGCCTAGTATCTTTTCTCCTTTACCAAACTTTGTCCCTGAATCATCTC
dot-bracket secondary structure
.(((((..(((((((((((.....(((((((((((((.(((((((((((..(.(((((((((((....))))))))))).)..)))))))))))..))))
)))))))))...............))))))))).....))..))))).
SIMILARITIES| miRBase hsa-mir-548i-1: 5e-47 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 7e-25 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
