ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-548i-5 (MI0008757)
SEQUENCE & STRUCTURE| miRNA AAAAGTAATTGCGGATTTTGCC miRNA* CAAAAACAGCAATTCTTTTTGT mismatches: 3 bulges: 0 |
pre-miRNA
AGATGGCTCCGAAGTTTGCATCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAACAGCAATTCTTTTTGTAGCAG
CCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGACATCTCA
dot-bracket secondary structure
(((((.((((((((((((.....((((((((((.((((((((.((((((.(.(((((((((((....))))))))))).).)))))).)))))))).)))
)))))))................))))))))).....))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGATGGCTCCGAAGTTTGCATCCTATTAGGTTGGTGCAAAAGTAATTGCGGATTTTGCCATTAAAAGTAATGGCAAAAACAGCAATTCTTTTTGTAGCAG
CCTAGTATCTTTTCTCCTTCTACCAAACTTTGTCCCTGAGACATCTCA
dot-bracket secondary structure
(((((.((((((((((((.....((((((((((.((((((((.((((((.(.(((((((((((....))))))))))).).)))))).)))))))).)))
)))))))................))))))))).....))).)))))..
SIMILARITIES| miRBase ptr-mir-548i-6: 2e-80 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 3e-36 |
Identical with: ptr-mir-548i-6 from miRBase (MNEST030482) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
