ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-548k (MI0008760)
SEQUENCE & STRUCTURE| miRNA AAAAGTACTTGCGGATTTTGCT miRNA* CAAAAACCGCAATTATTTTTGC mismatches: 2 bulges: 0 |
pre-miRNA
TTTTCTCAAGTATTGCTGTTAGGTTGGTGCAAAAGTACTTGCGGATTTTGCTTTACTTTTAATGGCAAAAACCGCAATTATTTTTGCTTCAACCTAATAT
GATGCAAAATTGGCT
dot-bracket secondary structure
.........((((((.(((((((((((.(((((((((.((((((.(((((((...........))))))).)))))).))))))))).))))))))))))
)))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TTTTCTCAAGTATTGCTGTTAGGTTGGTGCAAAAGTACTTGCGGATTTTGCTTTACTTTTAATGGCAAAAACCGCAATTATTTTTGCTTCAACCTAATAT
GATGCAAAATTGGCT
dot-bracket secondary structure
.........((((((.(((((((((((.(((((((((.((((((.(((((((...........))))))).)))))).))))))))).))))))))))))
)))))..........
SIMILARITIES| miRBase hsa-mir-548k: 7e-61 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 2e-18 |
Identical with: hsa-mir-548k from miRBase (MNEST028841) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
