ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-550
source: miRBase, original name: ptr-mir-550-1 (MI0008765)
SEQUENCE & STRUCTURE| miRNA AGTGCCTGAGGGAGTAAGAGCCC miRNA* GTCTTACTCCCTCAGGCACATC mismatches: 2 bulges: 1 |
pre-miRNA
TGATGCTTTGCTGGCTGGTGCAGTGCCTGAGGGAGTAAGAGCCCTGTTGTTGTAAGATAGTGTCTTACTCCCTCAGGCACATCTCCAACAAGTCTC
dot-bracket secondary structure
.((.((((.(.(((..(((...((((((((((((((((((.(.(((((.......))))).)))))))))))))))))))))).))).))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGATGCTTTGCTGGCTGGTGCAGTGCCTGAGGGAGTAAGAGCCCTGTTGTTGTAAGATAGTGTCTTACTCCCTCAGGCACATCTCCAACAAGTCTC
dot-bracket secondary structure
.((.((((.(.(((..(((...((((((((((((((((((.(.(((((.......))))).)))))))))))))))))))))).))).))))).))
SIMILARITIES| miRBase hsa-mir-550a-1: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-550: 8e-42 |
Identical with: hsa-mir-550a-1 from miRBase (MNEST028859) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
