ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-551
source: miRBase, original name: ptr-mir-551a (MI0008768)
SEQUENCE & STRUCTURE| miRNA GCGACCCACTCTTGGTTTCCA miRNA* GAAATCCAGAGTGGGTGGGGCCT mismatches: 2 bulges: 2 |
pre-miRNA
GGGGACTGCCGGGTGACCCTGGAAATCCAGAGTGGGTGGGGCCTGTCTGACCGTTTCTAGGCGACCCACTCTTGGTTTCCAGGGTTGCCCTGGAA
dot-bracket secondary structure
(....)..(((((..((((((((((((.(((((((((...(((((............))))).))))))))).))))))))))))..))).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GGGGACTGCCGGGTGACCCTGGAAATCCAGAGTGGGTGGGGCCTGTCTGACCGTTTCTAGGCGACCCACTCTTGGTTTCCAGGGTTGCCCTGGAA
dot-bracket secondary structure
(....)..(((((..((((((((((((.(((((((((...(((((............))))).))))))))).))))))))))))..))).))..
SIMILARITIES| miRBase ppy-mir-551a: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-551: 5e-40 |
Identical with: ppy-mir-551a from miRBase (MNEST031134) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
