ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-551
source: miRBase, original name: ptr-mir-551b (MI0008769)
SEQUENCE & STRUCTURE| miRNA GCGACCCATACTTGGTTTCAG miRNA* GAAATCAAGCGTGGGTGAGA mismatches: 4 bulges: 1 |
pre-miRNA
GATGTGCTCTCCTGGCCCATGAAATCAAGCGTGGGTGAGACCTGGTGCAGAACGGGAAGGCGACCCATACTTGGTTTCAGAGGCTGCGAGAATA
dot-bracket secondary structure
.......((((.(((((..((((((((((..((((((...((((........))))....).)))))..))))))))))..))))).))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GATGTGCTCTCCTGGCCCATGAAATCAAGCGTGGGTGAGACCTGGTGCAGAACGGGAAGGCGACCCATACTTGGTTTCAGAGGCTGCGAGAATA
dot-bracket secondary structure
.......((((.(((((..((((((((((..((((((...((((........))))....).)))))..))))))))))..))))).))))...
SIMILARITIES| miRBase mml-mir-551b: 5e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-551: 5e-34 |
Identical with: eca-mir-551b from miRBase (MNEST027234) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
