ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-552
source: miRBase, original name: ptr-mir-552 (MI0008770)
SEQUENCE & STRUCTURE| miRNA AACAGGTGACTGGTTAGACAA miRNA* GTTTAACCTTTTGCCTGTTGG mismatches: 4 bulges: 0 |
pre-miRNA
AACCATTCAAATATACCACAGTTTGTTTAACCTTTTGCCTGTTGGTTGAAGATGCCTTTCAACAGGTGACTGGTTAGACAAACTGTGGTATATAC
dot-bracket secondary structure
..........((((((((((((((((((((((..(..((((((((..(.......)..))))))))..)..))))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AACCATTCAAATATACCACAGTTTGTTTAACCTTTTGCCTGTTGGTTGAAGATGCCTTTCAACAGGTGACTGGTTAGACAAACTGTGGTATATAC
dot-bracket secondary structure
..........((((((((((((((((((((((..(..((((((((..(.......)..))))))))..)..))))))))))))))))))))))..
SIMILARITIES| miRBase hsa-mir-552: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-552: 1e-40 |
Identical with: hsa-mir-552 from miRBase (MNEST028865) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
