ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-554
source: miRBase, original name: ptr-mir-554 (MI0008772)
SEQUENCE & STRUCTURE| miRNA GCTAGTCCTGACTCAGCCAGT miRNA* TGGTGATGGGTCAGGGTTCATATTTTGGCAT mismatches: 0 bulges: 10 |
pre-miRNA
CCTGAGTAACCTTTGCTAGTCCTGACTCAGCCAGTACTGGTCTTAGACTGGTGATGGGTCAGGGTTCATATTTTGGCATCTCTCTCTGGGCATCT
dot-bracket secondary structure
((.(((.......((((((((((((((((((((((.(((....)))))))))..))))))))))........)))))).....))).))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCTGAGTAACCTTTGCTAGTCCTGACTCAGCCAGTACTGGTCTTAGACTGGTGATGGGTCAGGGTTCATATTTTGGCATCTCTCTCTGGGCATCT
dot-bracket secondary structure
((.(((.......((((((((((((((((((((((.(((....)))))))))..))))))))))........)))))).....))).))......
SIMILARITIES| miRBase hsa-mir-554: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-554: 8e-36 |
Identical with: hsa-mir-554 from miRBase (MNEST028867) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
