ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-555
source: miRBase, original name: ptr-mir-555 (MI0008773)
SEQUENCE & STRUCTURE| miRNA AGGGTAAGCTGAACCTCTGAT miRNA* CAGATGTGGAGCACTACCTTTG mismatches: 5 bulges: 1 |
pre-miRNA
GGAGTGAACTCAGATGTGGAGCACTACCTTTGTGAGCAGTGTGACCCAAGGCCTGTGGACAGGGTAAGCTGAACCTCTGATAAAACTCTGATCTA
dot-bracket secondary structure
(((((....(((((.((..(((..((((((.((..((((.((........))))))..)))))))).)))..)).)))))....)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GGAGTGAACTCAGATGTGGAGCACTACCTTTGTGAGCAGTGTGACCCAAGGCCTGTGGACAGGGTAAGCTGAACCTCTGATAAAACTCTGATCTA
dot-bracket secondary structure
(((((....(((((.((..(((..((((((.((..((((.((........))))))..)))))))).)))..)).)))))....)))))......
SIMILARITIES| miRBase hsa-mir-555: 5e-49 PMRD no hits microPC no hits | UniProt sp|Q9NR48|ASH1L_HUMAN: 0.000002 RFAM no hits |
Identical with: hsa-mir-555 from miRBase (MNEST028868) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
