ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-556
source: miRBase, original name: ptr-mir-556 (MI0008774)
SEQUENCE & STRUCTURE| miRNA ATATTACCATTAGCTCATCTTT miRNA* AGATGAGCTCATTGTAATATGA mismatches: 2 bulges: 0 |
pre-miRNA
ATAGTAATAAGAAAGATGAGCTCATTGTAATATGAGCTTCATTTATACATTTCATATTACCATTAGCTCATCTTTTTTATTACTACCTTCAACA
dot-bracket secondary structure
.(((((((((((((((((((((.((.((((((((((..............)))))))))).)).))))))))))))))))))))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ATAGTAATAAGAAAGATGAGCTCATTGTAATATGAGCTTCATTTATACATTTCATATTACCATTAGCTCATCTTTTTTATTACTACCTTCAACA
dot-bracket secondary structure
.(((((((((((((((((((((.((.((((((((((..............)))))))))).)).))))))))))))))))))))).........
SIMILARITIES| miRBase hsa-mir-556: 2e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-556: 3e-47 |
Identical with: hsa-mir-556 from miRBase (MNEST028870) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
