ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-558
source: miRBase, original name: ptr-mir-558 (MI0008776)
SEQUENCE & STRUCTURE| miRNA TGAGCTGCTGTACCAAAAT miRNA* TTTGGTATAGTAGCTCTAG mismatches: 1 bulges: 0 |
pre-miRNA
TGTGTGTGTGTGTGTGTGGTTATTTTGGTATAGTAGCTCTAGACTCTATTATAGTTTCCTGAGCTGCTGTACCAAAATACCACAAATGGGCTG
dot-bracket secondary structure
.......((.(((.((((((.((((((((((((((((((..((..(((...)))..))..)))))))))))))))))))))))).))).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGTGTGTGTGTGTGTGTGGTTATTTTGGTATAGTAGCTCTAGACTCTATTATAGTTTCCTGAGCTGCTGTACCAAAATACCACAAATGGGCTG
dot-bracket secondary structure
.......((.(((.((((((.((((((((((((((((((..((..(((...)))..))..)))))))))))))))))))))))).))).))..
SIMILARITIES| miRBase hsa-mir-558: 1e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-558: 1e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
