ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-564
source: miRBase, original name: ptr-mir-564 (MI0008780)
SEQUENCE & STRUCTURE| miRNA AGGCACGGTGTCAGCAGGC miRNA* CTCCGGGCGGCGCCGTGTCCGC mismatches: 1 bulges: 5 |
pre-miRNA
GGGCGGCGGGTGCCAGGCACGGTGTCAGCAGGCAACATGGCTGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGAC
dot-bracket secondary structure
(((..((((.(((..(((((((((((.((((((....(((((....)))))..))))....))))))))))))).))).))))...)))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GGGCGGCGGGTGCCAGGCACGGTGTCAGCAGGCAACATGGCTGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGAC
dot-bracket secondary structure
(((..((((.(((..(((((((((((.((((((....(((((....)))))..))))....))))))))))))).))).))))...)))....
SIMILARITIES| miRBase hsa-mir-564: 4e-43 PMRD no hits microPC no hits | UniProt sp|Q5R7Q1|TMM42_PONAB: 0.0002 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
