ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-566
source: miRBase, original name: ptr-mir-566 (MI0008781)
SEQUENCE & STRUCTURE| miRNA GGGCGCCTGTGATCCCAAC miRNA* TGGGGCAGCAGAATCGCTTGA mismatches: 4 bulges: 2 |
pre-miRNA
CTAGGCGTGGTGGCGGGCGCCTGTGATCCCAACTACTCAGGAGGCTGGGGCAGCAGAATCGCTTGAACCCGGGAGGCGAAGGTTGCAGTGAGC
dot-bracket secondary structure
.....((.(((..((((((.((((..(((((.((.(....).)).)))))..))))...)))))).))))).(..((....))..).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CTAGGCGTGGTGGCGGGCGCCTGTGATCCCAACTACTCAGGAGGCTGGGGCAGCAGAATCGCTTGAACCCGGGAGGCGAAGGTTGCAGTGAGC
dot-bracket secondary structure
.....((.(((..((((((.((((..(((((.((.(....).)).)))))..))))...)))))).))))).(..((....))..).......
SIMILARITIES| miRBase hsa-mir-566: 7e-48 PMRD ptc-miRf12524-akr: 0.000000000000005 microPC no hits | UniProt sp|Q8N8F4|YV027_HUMAN: 0.0001 RFAM Metazoa_SRP: 1e-25 |
Identical with: hsa-mir-566 from miRBase (MNEST028878) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
