ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-570 (MI0012566)
SEQUENCE & STRUCTURE| miRNA CGAAAACTGCAATAACCTTTGC miRNA* AAAGGTAATTGCCGTTTTTGCC mismatches: 2 bulges: 0 |
pre-miRNA
TTATTAGGTTGATGCAAAGGTAATTGCCGTTTTTGCCATCACTTTCAATAGCGAAAACTGCAATAACCTTTGCACCAACCT
dot-bracket secondary structure
.....((((((.(((((((((.(((((.((((((((.((........)).)))))))).))))).))))))))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
TTATTAGGTTGATGCAAAGGTAATTGCCGTTTTTGCCATCACTTTCAATAGCGAAAACTGCAATAACCTTTGCACCAACCT
dot-bracket secondary structure
.....((((((.(((((((((.(((((.((((((((.((........)).)))))))).))))).))))))))).))))))
SIMILARITIES| miRBase hsa-mir-570: 0.00000000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 5e-18 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
