ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-548
source: miRBase, original name: ptr-mir-579 (MI0008789)
SEQUENCE & STRUCTURE| miRNA TTCATTTGGTATAAACCGCGATT miRNA* TCGCGGTTTGTGCCAGATGACGATT mismatches: 0 bulges: 2 |
pre-miRNA
ATATTAGGTTAATGCAAAAGTAATCGCGGTTTGTGCCAGATGACGATTTGAATTAATAAATTCATTTGGTATAAACCGCGATTATTTTTGCATCAAC
dot-bracket secondary structure
.......(((.((((((((((((((((((((((((((((((((..(((((......))))))))))))))))))))))))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ATATTAGGTTAATGCAAAAGTAATCGCGGTTTGTGCCAGATGACGATTTGAATTAATAAATTCATTTGGTATAAACCGCGATTATTTTTGCATCAAC
dot-bracket secondary structure
.......(((.((((((((((((((((((((((((((((((((..(((((......))))))))))))))))))))))))))))))))))))).)))
SIMILARITIES| miRBase hsa-mir-579: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 0.000005 |
Identical with: hsa-mir-579 from miRBase (MNEST028893) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
