ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-598
source: miRBase, original name: ptr-mir-598 (MI0008804)
SEQUENCE & STRUCTURE| miRNA TACGTCATCGTTGTCATCGTCA miRNA* GCGGTGATCCCGATGGTGTGAGC mismatches: 5 bulges: 1 |
pre-miRNA
GCTTGATGATGCTGCTGATGCTGGCGGTGATCCCGATGGTGTGAGCTGGAAATGGGGTGCTACGTCATCGTTGTCATCGTCATCATCATCATCCGA
dot-bracket secondary structure
(..((((((((..((....)).(((((((((..(((((..((.(((............)))))..)))))..)))))))))..))))))))..)..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GCTTGATGATGCTGCTGATGCTGGCGGTGATCCCGATGGTGTGAGCTGGAAATGGGGTGCTACGTCATCGTTGTCATCGTCATCATCATCATCCGA
dot-bracket secondary structure
(..((((((((..((....)).(((((((((..(((((..((.(((............)))))..)))))..)))))))))..))))))))..)..
SIMILARITIES| miRBase mml-mir-598: 1e-49 PMRD ath-miRf11092-akr: 0.00007 microPC no hits | UniProt no hits RFAM mir-598: 5e-43 |
Identical with: ppy-mir-598 from miRBase (MNEST031177) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
