ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-619
source: miRBase, original name: ptr-mir-619 (MI0008818)
SEQUENCE & STRUCTURE| miRNA GACCTGGACATGTTTGTGCCCAGT miRNA* TGGGATTACAGGCATGAGCCACCGT mismatches: 2 bulges: 5 |
pre-miRNA
CGCCCACCTCAGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACCGTGGTCGACCATGACCTGGACATGTTTGTGCCCAGTACTGTCAGTTTGCA
dot-bracket secondary structure
.((..((..(((..........(((((((..((((((((((..(((.(((((....)))))...))).))))))))))))))))))))...))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CGCCCACCTCAGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACCGTGGTCGACCATGACCTGGACATGTTTGTGCCCAGTACTGTCAGTTTGCA
dot-bracket secondary structure
.((..((..(((..........(((((((..((((((((((..(((.(((((....)))))...))).))))))))))))))))))))...))..)).
SIMILARITIES| miRBase hsa-mir-619: 5e-46 PMRD ptc-miRf12412-akr: 0.000000005 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 2e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
