ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-628
source: miRBase, original name: ptr-mir-628 (MI0008824)
SEQUENCE & STRUCTURE| miRNA TCTAGTAAGAGTGGCAGTCGA miRNA* GCTGACATATTTACTAGAGG mismatches: 3 bulges: 1 |
pre-miRNA
ATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAATTAATAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGGCTCA
dot-bracket secondary structure
........((.(((.((((((..(((((.(((.(((((((((((((..........))))))))))))).))).))).))..))))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAATTAATAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGGCTCA
dot-bracket secondary structure
........((.(((.((((((..(((((.(((.(((((((((((((..........))))))))))))).))).))).))..))))))))).))
SIMILARITIES| miRBase cfa-mir-628: 2e-48 PMRD no hits microPC no hits | UniProt no hits RFAM mir-628: 2e-36 |
Identical with: cfa-mir-628 from miRBase (MNEST026891) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
