miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST030630
species: Pan troglodytes
miRNA family: mir-1178
source: miRBase, original name: ptr-mir-1178 (MI0008413)







SEQUENCE & STRUCTURE
miRNA
TTGCTCACTGTTCTTCCCTAG

miRNA*
AGGGAAGGGTCCGGGGTCGGC

mismatches: 8
bulges: 0

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pre-miRNA
GGGTTGGCTGGCAGAGGAAGGGAAGGGTCCGGGGTCGGCTGAGCATGCCCTCAGGTTGCTCACTGTTCTTCCCTAGAATGTCAGGTGATG

dot-bracket secondary structure
..((((.((((((.....(((((((..(...((((.(.(((((......))))).).))))...)..)))))))....)))))).)))).


SIMILARITIES
miRBase ppy-mir-1178: 7e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1178: 5e-40

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"




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