ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-379
source: miRBase, original name: ptr-mir-1197 (MI0008421)
SEQUENCE & STRUCTURE| miRNA TAGGACACATGGTCTACTTCT miRNA* ATGCGGTTGACCATGGTGTGTACG mismatches: 5 bulges: 3 |
pre-miRNA
CTTCCTGGTATTTGAAGATGCGGTTGACCATGGTGTGTACGCTTTATTTGTGACGTAGGACACATGGTCTACTTCTTCTCAATATCA
dot-bracket secondary structure
......((((((.(((((...(((.(((((((...(.(((((.........).)))).)...))))))).))))))))..)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CTTCCTGGTATTTGAAGATGCGGTTGACCATGGTGTGTACGCTTTATTTGTGACGTAGGACACATGGTCTACTTCTTCTCAATATCA
dot-bracket secondary structure
......((((((.(((((...(((.(((((((...(.(((((.........).)))).)...))))))).))))))))..)))))).
SIMILARITIES| miRBase hsa-mir-1197: 3e-44 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 4e-34 |
Identical with: hsa-mir-1197 from miRBase (MNEST029059) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
