ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-1253
source: miRBase, original name: ptr-mir-1253 (MI0008458)
SEQUENCE & STRUCTURE| miRNA AGAGAAGAAGATCAGCCTGCA miRNA* CAGGCTGATCTTCTCCCCTTT mismatches: 2 bulges: 0 |
pre-miRNA
AGCAGCAAGAGATAGAATCCAAAAGAGAAGAAGATCAGCCTGCAGATGTGGACTGCTAAATGCAGGCTGATCTTCTCCCCTTTGGGATTCTCTTATGAGA
AGCC
dot-bracket secondary structure
.((..((.((((..((((((.((((.(.((((((((((((((((....(((....)))..)))))))))))))))).).)))).)))))))))).))...
.)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGCAGCAAGAGATAGAATCCAAAAGAGAAGAAGATCAGCCTGCAGATGTGGACTGCTAAATGCAGGCTGATCTTCTCCCCTTTGGGATTCTCTTATGAGA
AGCC
dot-bracket secondary structure
.((..((.((((..((((((.((((.(.((((((((((((((((....(((....)))..)))))))))))))))).).)))).)))))))))).))...
.)).
SIMILARITIES| miRBase hsa-mir-1253: 2e-54 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1253: 4e-41 |
Identical with: hsa-mir-1253 from miRBase (MNEST029098) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
