ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-1273
source: miRBase, original name: ptr-mir-1273 (MI0008474)
SEQUENCE & STRUCTURE| miRNA GGGCGACAAAGCAAGACTCTTTCTT miRNA* GAAAATTGCTTGAACCTGG mismatches: 5 bulges: 6 |
pre-miRNA
TGAGGCAGGAAAATTGCTTGAACCTGGGTGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAAAGCAAGACTCTTTCTT
GG
dot-bracket secondary structure
.....(((((((.((((((...((..(((..(((((..(((((((.((((....)).)))))))))))))))))..)).....)))))).....))))))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGAGGCAGGAAAATTGCTTGAACCTGGGTGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGGCGACAAAGCAAGACTCTTTCTT
GG
dot-bracket secondary structure
.....(((((((.((((((...((..(((..(((((..(((((((.((((....)).)))))))))))))))))..)).....)))))).....))))))
).
SIMILARITIES| miRBase hsa-mir-1273: 2e-48 PMRD ptc-miRf12524-akr: 0.000001 microPC no hits | UniProt sp|Q6UX73|CP089_HUMAN: 0.00000008 RFAM Metazoa_SRP: 5e-31 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
