ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-1289
source: miRBase, original name: ptr-mir-1289-1 (MI0008489)
SEQUENCE & STRUCTURE| miRNA TGGAGTCCAGGAATCTGCATTTT miRNA* AATGCAGACTCTTGGATTCCACC mismatches: 2 bulges: 0 |
pre-miRNA
TTCTCAATTTTTAGTAGGAATTAAAAACAAAACTGGTAAATGCAGACTCTTGGATTCCACCCCCAGAGAATCCCTAAACCGGGGGTGGAGTCCAGGAATC
TGCATTTTAGAAAGTACCCAGGGTGATTCTGATACATTGGGAAC
dot-bracket secondary structure
((((((((...((...(((((((........(((...(((((((((.(((((((((((((((((..((.....)).....))))))))))))))))).))
))))))).....)))........)))))))..)).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TTCTCAATTTTTAGTAGGAATTAAAAACAAAACTGGTAAATGCAGACTCTTGGATTCCACCCCCAGAGAATCCCTAAACCGGGGGTGGAGTCCAGGAATC
TGCATTTTAGAAAGTACCCAGGGTGATTCTGATACATTGGGAAC
dot-bracket secondary structure
((((((((...((...(((((((........(((...(((((((((.(((((((((((((((((..((.....)).....))))))))))))))))).))
))))))).....)))........)))))))..)).)))))))).
SIMILARITIES| miRBase ppy-mir-1289-1: 3e-73 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
