ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: miR-1302d
source: miRBase, original name: ptr-mir-1302-1 (MI0008516)
SEQUENCE & STRUCTURE| miRNA TTGGGACATACTTATGCTAAA miRNA* TATGTAAGAATATCCCATAC mismatches: 5 bulges: 1 |
pre-miRNA
CAGAAAGCCCAGTTAAATTTGAATTTCAAGTAAACAATGAATAATTGTGTATGTAAGAATATCCCATACAATATTTGGGACATACTTATGCTAAAAATTA
TTCCTTGCTTATCTGAAATTCAAATGTAACTAGGATTCCTGT
dot-bracket secondary structure
(((....((.(((((.((((((((((((..(((.(((.((((((((...((((((((.((.(((((.........))))).)).)))))).))..)))))
))).))).)))..)))))))))))).))))).))....))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAGAAAGCCCAGTTAAATTTGAATTTCAAGTAAACAATGAATAATTGTGTATGTAAGAATATCCCATACAATATTTGGGACATACTTATGCTAAAAATTA
TTCCTTGCTTATCTGAAATTCAAATGTAACTAGGATTCCTGT
dot-bracket secondary structure
(((....((.(((((.((((((((((((..(((.(((.((((((((...((((((((.((.(((((.........))))).)).)))))).))..)))))
))).))).)))..)))))))))))).))))).))....))).
SIMILARITIES| miRBase hsa-mir-1302-1: 7e-77 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1302: 0.0000005 |
Identical with: hsa-mir-1302-1 from miRBase (MNEST029159) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
