ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-10
source: miRBase, original name: ppy-mir-10a (MI0002789)
SEQUENCE & STRUCTURE| miRNA TACCCCGTAGATCCGAATTTGTG miRNA* CAAATTCGTATTTAGGGGAATA mismatches: 2 bulges: 1 |
pre-miRNA
GATCTGTCTGTCTTCTGTATATACCCCGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATTTAGGGGAATATGTAGTTGACATAAAC
ACTCCGCTCG
dot-bracket secondary structure
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))
).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GATCTGTCTGTCTTCTGTATATACCCCGTAGATCCGAATTTGTGTAAGGAATTTTGTGGTCACAAATTCGTATTTAGGGGAATATGTAGTTGACATAAAC
ACTCCGCTCG
dot-bracket secondary structure
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))
).........
SIMILARITIES| miRBase age-mir-10a: 2e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 3e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
