ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-29
source: miRBase, original name: ppy-mir-29b-1 (MI0002726)
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGT miRNA* TGGTTTCATATGGTGGTTTAGA mismatches: 1 bulges: 2 |
pre-miRNA
CTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGG
dot-bracket secondary structure
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CTTCAGGAAGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTTCTTGGGGG
dot-bracket secondary structure
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).
SIMILARITIES| miRBase eca-mir-29b: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 2e-26 |
Identical with: cfa-mir-29b-1 from miRBase (MNEST026649) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
