ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-30
source: miRBase, original name: ppy-mir-30c-1 (MI0014803)
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGC miRNA* TGGGAGAGGGTTGTTTACTCC mismatches: 3 bulges: 2 |
pre-miRNA
ACCATGCTGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCAAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGA
dot-bracket secondary structure
.(((((..((((...(.(((((((.(((...(((((((((.((....))....))))))))).))).))))))).)...))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
ACCATGCTGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCAAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGA
dot-bracket secondary structure
.(((((..((((...(.(((((((.(((...(((((((((.((....))....))))))))).))).))))))).)...))))))))).
SIMILARITIES| miRBase eca-mir-30c: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-21 |
Identical with: eca-mir-30c from miRBase (MNEST026976) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
