ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-34
source: miRBase, original name: ppy-mir-34a (MI0002799)
SEQUENCE & STRUCTURE| miRNA TGGCAGTGTCTTAGCTGGTTGT miRNA* AATCAGCAAGTATACTGCCCTA mismatches: 1 bulges: 2 |
pre-miRNA
GGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAGTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGT
TGTGGGGCCC
dot-bracket secondary structure
((((.((((((((..(((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..)))))..)).)))).
.))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAGTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTGCACGT
TGTGGGGCCC
dot-bracket secondary structure
((((.((((((((..(((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..)))))..)).)))).
.))..)))).
SIMILARITIES| miRBase ggo-mir-34a: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 4e-38 |
Identical with: hsa-mir-34a from miRBase (MNEST028401) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
