ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-99
source: miRBase, original name: ppy-mir-100 (MI0002712)
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGAACTTGTG miRNA* CAAGCTTGTATCTATAGGTATG mismatches: 5 bulges: 0 |
pre-miRNA
CCTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTATTAGTCCGCACAAGCTTGTATCTATAGGTATGTGTCTGTTAGG
dot-bracket secondary structure
((((..(.((((.(((..(((((.(((.(((((((........).)))))).))).)))))..))).)))).)...))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CCTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTATTAGTCCGCACAAGCTTGTATCTATAGGTATGTGTCTGTTAGG
dot-bracket secondary structure
((((..(.((((.(((..(((((.(((.(((((((........).)))))).))).)))))..))).)))).)...))))
SIMILARITIES| miRBase ggo-mir-100: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 6e-30 |
Identical with: ptr-mir-100 from miRBase (MNEST030198) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
