ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-146
source: miRBase, original name: ppy-mir-146b (MI0014835)
SEQUENCE & STRUCTURE| miRNA TGCCCTGTGGACTCAGTTCTGG miRNA* GAGAACTGAATTCCATAGGCTGTG mismatches: 3 bulges: 2 |
pre-miRNA
CCTGGCACTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAAATGCCCTGTGGACTCAGTTCTGGTGCCCGG
dot-bracket secondary structure
((.((((((.((((((((..((((((((..((..((....))..))..)))))))).)))))))))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
CCTGGCACTGAGAACTGAATTCCATAGGCTGTGAGCTCTAGCAAATGCCCTGTGGACTCAGTTCTGGTGCCCGG
dot-bracket secondary structure
((.((((((.((((((((..((((((((..((..((....))..))..)))))))).)))))))))))))).))
SIMILARITIES| miRBase ppy-mir-146b: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-146: 1e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
