ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-147
source: miRBase, original name: ppy-mir-147 (MI0002771)
SEQUENCE & STRUCTURE| miRNA GTGTGTGGAAATGCTTCTGC miRNA* AGAAAACATTTCTGCACACAC mismatches: 5 bulges: 1 |
pre-miRNA
AATCTAAAGAAAACATTTCTGCACACACACCAGACTATGGAAGCCAGTGTGTGGAAATGCTTCTGCTAGATT
dot-bracket secondary structure
((((((.((((..((((((..(((((...(((.....)))......)))))..)))))).))))..))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AATCTAAAGAAAACATTTCTGCACACACACCAGACTATGGAAGCCAGTGTGTGGAAATGCTTCTGCTAGATT
dot-bracket secondary structure
((((((.((((..((((((..(((((...(((.....)))......)))))..)))))).))))..))))))
SIMILARITIES| miRBase ppa-mir-147: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-147: 2e-29 |
Identical with: ppa-mir-147 from miRBase (MNEST030100) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
