ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-148
source: miRBase, original name: ppy-mir-148b (MI0014838)
SEQUENCE & STRUCTURE| miRNA TCAGTGCATCACAGAACTTTGT miRNA* GAAGTTCTGTTATACACTCAGGCT mismatches: 4 bulges: 2 |
pre-miRNA
CAAGCACGATTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTA
dot-bracket secondary structure
.......((..(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
CAAGCACGATTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCTA
dot-bracket secondary structure
.......((..(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).))).))..
SIMILARITIES| miRBase mml-mir-148b: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 1e-40 |
Identical with: ssc-mir-148b from miRBase (MNEST033999) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
