ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-153
source: miRBase, original name: ppy-mir-153 (MI0002564)
SEQUENCE & STRUCTURE| miRNA TTGCATAGTCACAAAAGTGATC miRNA* CATTTTTGTGATCTGCAGCT mismatches: 2 bulges: 1 |
pre-miRNA
CTCACAGCTGCCAGTGTCATTTTTGTGATCTGCAGCTAGTATTCTCACTCCAGTTGCATAGTCACAAAAGTGATCATTGGCAGGTGTGGC
dot-bracket secondary structure
.(((((.((((((((((((((((((((((.((((((((((......)))..)))))))..))))))))))))).))))))))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CTCACAGCTGCCAGTGTCATTTTTGTGATCTGCAGCTAGTATTCTCACTCCAGTTGCATAGTCACAAAAGTGATCATTGGCAGGTGTGGC
dot-bracket secondary structure
.(((((.((((((((((((((((((((((.((((((((((......)))..)))))))..))))))))))))).))))))))).))))).
SIMILARITIES| miRBase mml-mir-153-1: 4e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-153: 2e-42 |
Identical with: mml-mir-153-1 from miRBase (MNEST027763) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
