ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-183
source: miRBase, original name: ppy-mir-183 (MI0014848)
SEQUENCE & STRUCTURE| miRNA TATGGCACTGGTAGAATTCACT miRNA* TGAATTACCGAAGGGCCATAAA mismatches: 2 bulges: 4 |
pre-miRNA
CAGAGCGTGACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAACAGTCTCAGTCAGTGAATTACCGAAGGGCCATAAACAGAGCAGAGACAGA
TCCACGA
dot-bracket secondary structure
.....((((..(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).))))))))).....))
..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
CAGAGCGTGACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAACAGTCTCAGTCAGTGAATTACCGAAGGGCCATAAACAGAGCAGAGACAGA
TCCACGA
dot-bracket secondary structure
.....((((..(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).))))))))).....))
..)))).
SIMILARITIES| miRBase ggo-mir-183: 9e-54 PMRD no hits microPC no hits | UniProt no hits RFAM mir-183: 1e-47 |
Identical with: mmu-mir-183 from miRBase (MNEST031899) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
