ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-188
source: miRBase, original name: ppy-mir-188 (MI0002610)
SEQUENCE & STRUCTURE| miRNA CATCCCTTGCATGGTGGAGGGT miRNA* CCTCCCACATGCAGGGTTTGCA mismatches: 5 bulges: 0 |
pre-miRNA
TGCTCCCTCTCTCACATCCCTTGCATGGTGGAGGGTGAGCTTTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGATGGCGAGCC
dot-bracket secondary structure
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGCTCCCTCTCTCACATCCCTTGCATGGTGGAGGGTGAGCTTTCTGAAAACCCCTCCCACATGCAGGGTTTGCAGGATGGCGAGCC
dot-bracket secondary structure
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).
SIMILARITIES| miRBase hsa-mir-188: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-188: 2e-39 |
Identical with: hsa-mir-188 from miRBase (MNEST028496) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
