ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-193
source: miRBase, original name: ppy-mir-193b (MI0014856)
SEQUENCE & STRUCTURE| miRNA AACTGGCCCTCAAAGTCCCGCT miRNA* CGGGGTTTTGAGGGCGAGATGA mismatches: 5 bulges: 0 |
pre-miRNA
GTGGTCTCAGAATCGGGGTTTTGAGGGCGAGATGAGTTTATGTTTTATCCAACTGGCCCTCAAAGTCCCGCTTTTGGGGTCAT
dot-bracket secondary structure
(((..(((((((.((((..(((((((((.((.((..(.........)..)).)).)))))))))..)))).)))))))..)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
GTGGTCTCAGAATCGGGGTTTTGAGGGCGAGATGAGTTTATGTTTTATCCAACTGGCCCTCAAAGTCCCGCTTTTGGGGTCAT
dot-bracket secondary structure
(((..(((((((.((((..(((((((((.((.((..(.........)..)).)).)))))))))..)))).)))))))..)))
SIMILARITIES| miRBase mml-mir-193b: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-193: 1e-40 |
Identical with: mml-mir-193b from miRBase (MNEST027786) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
