ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-196
source: miRBase, original name: ppy-mir-196-2 (MI0002826)
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCATGTTGTTGGG miRNA* CGGCAACAAGAAACTGCCTGAG mismatches: 1 bulges: 0 |
pre-miRNA
TGCTCGCTCAGCTGATCTGTGGCTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTT
CGTCGAGGGC
dot-bracket secondary structure
..(((((..(((((((.((((((((((((((((((.((((((((((.(..(...)..).)))))))))).))))))))))))))))))...)))))))..
.).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGCTCGCTCAGCTGATCTGTGGCTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGAGTTACATCAGTCGGTTTT
CGTCGAGGGC
dot-bracket secondary structure
..(((((..(((((((.((((((((((((((((((.((((((((((.(..(...)..).)))))))))).))))))))))))))))))...)))))))..
.).))))...
SIMILARITIES| miRBase mml-mir-196a-2: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 2e-45 |
Identical with: ptr-mir-196a-2 from miRBase (MNEST030272) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
