ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-196
source: miRBase, original name: ppy-mir-196b (MI0014858)
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCCTGTTGTTGGG miRNA* CGACAGCACGACACTGCCTTCA mismatches: 3 bulges: 0 |
pre-miRNA
ACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTG
dot-bracket secondary structure
(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
ACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTG
dot-bracket secondary structure
(((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))))))))..
SIMILARITIES| miRBase hsa-mir-196b: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 6e-36 |
Identical with: ptr-mir-196b from miRBase (MNEST030273) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
