ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-197
source: miRBase, original name: ppy-mir-197 (MI0002910)
SEQUENCE & STRUCTURE| miRNA TTCACCACCTTCTCCACCCAGC miRNA* CGGGTAGAGAGGGCAGTGGGAG mismatches: 5 bulges: 0 |
pre-miRNA
GGCTGTGCCGGGTAGAGAGGGCAGTGGGAGGTAAGAGCTCTTCACCCTTCACCACCTTCTCCACCCAGCATGGCC
dot-bracket secondary structure
((((((((.((((.(((((((..((((..((((((....))).)))..))))..))))))).)))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GGCTGTGCCGGGTAGAGAGGGCAGTGGGAGGTAAGAGCTCTTCACCCTTCACCACCTTCTCCACCCAGCATGGCC
dot-bracket secondary structure
((((((((.((((.(((((((..((((..((((((....))).)))..))))..))))))).)))).))))))))
SIMILARITIES| miRBase eca-mir-197: 3e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-197: 1e-33 |
Identical with: ptr-mir-197 from miRBase (MNEST030274) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
