ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-198
source: miRBase, original name: ppy-mir-198 (MI0002917)
SEQUENCE & STRUCTURE| miRNA GGTCCAGAGGGGAGATAGG miRNA* TTCTTCTCTGTAGAATAA mismatches: 4 bulges: 1 |
pre-miRNA
TCATTGGTCCAGAGGGGAGATAGGTTCCTGTGATTTTTCCTTCTTCTCTGTAGAATAAATGA
dot-bracket secondary structure
(((((..((.(.((((((((.(((..............))))))))))).).))...)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TCATTGGTCCAGAGGGGAGATAGGTTCCTGTGATTTTTCCTTCTTCTCTGTAGAATAAATGA
dot-bracket secondary structure
(((((..((.(.((((((((.(((..............))))))))))).).))...)))))
SIMILARITIES| miRBase ppa-mir-198: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-198: 6e-26 |
Identical with: ptr-mir-198 from miRBase (MNEST030275) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
