ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-219
source: miRBase, original name: ppy-mir-219 (MI0002886)
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AGTTGAGTCTGGACGTCCCG mismatches: 3 bulges: 1 |
pre-miRNA
CCGCCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTATGGCCCCGGCCGAGAGTTGAGTCTGGACGTCCCGAGCCGCCGCCCCCAAAC
CTCGAGCGGG
dot-bracket secondary structure
((((.(.((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))......
...).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CCGCCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTATGGCCCCGGCCGAGAGTTGAGTCTGGACGTCCCGAGCCGCCGCCCCCAAAC
CTCGAGCGGG
dot-bracket secondary structure
((((.(.((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))......
...).)))).
SIMILARITIES| miRBase ggo-mir-219: 2e-55 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 8e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
