ABOUT THIS RECORDspecies: Pongo pygmaeus
miRNA family: mir-154
source: miRBase, original name: ppy-mir-377 (MI0014925)
SEQUENCE & STRUCTURE| miRNA ATCACACAAAGGCAACTTTTGT miRNA* AGAGGTTGCCCTTGGTGAATTC mismatches: 1 bulges: 2 |
pre-miRNA
TTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTG
dot-bracket secondary structure
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
TTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTG
dot-bracket secondary structure
..((((((((((((((.(((((((.(((((.........).)))))))).))).)))))))))))))).
SIMILARITIES| miRBase cfa-mir-377: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 8e-32 |
Identical with: bta-mir-377 from miRBase (MNEST033352) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Brameier M, BMC Res Notes. 3:64(2010)., "Genome-wide comparative analysis of microRNAs in three non-human primates"
